Bacterial virus anti-defence systems · sequence & structure resource

Encyclopaedia of Bacterial Virus Anti-Defence Systems


Protein: AcrIA1

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Overview

Mode of Action (MoA) abolishes spacer acquisition by the type I-A CRISPR/Cas system.
Evidence Viral Cas4 protein (AcrIA1) was identified as an anti-adaptation factor through plasmid challenge and transformation assays in Sulfolobus islandicus overexpressing both the CRISPR activator Csa3a and a virus-encoded Cas4 from SSV Ragged Hills (SSVRH). Overexpression of AcrIA1 resulted in a near-complete loss of new spacer acquisition, as confirmed by the absence of expanded PCR bands in CRISPR arrays and <1% acquisition efficiency based on high-throughput sequencing. Despite this loss, the remaining spacers retained normal length distribution, indicating that AcrIA1 did not affect spacer size but specifically interfered with acquisition activity. Protospacers from the few acquired spacers lacked the conserved 3′ A/G motif, suggesting interference with motif recognition. These findings indicate that AcrIA1 inhibits the CRISPR-Cas subtype I-A system by suppressing PAM- and motif-dependent spacer acquisition, enabling potential escape of viral DNA from host immunity.
MoA Category unknown
Subtype(s) of the defence system(s) inhibited by the protein Defence Subtype Sulfolobus islandicus type I-A CRISPR-Cas
Relevant publication(s) DOI 10.1128/jb.00747-18, 10.1016/j.jmb.2023.167996
Other components of the anti-defence system Multicomponent System -
Known structure in PDB PDB ID -
Genome(s) encoding the protein Protein Source Sulfolobus spindle-shaped virus Ragged Hills
Defence system(s) inhibited by the protein Defences CRISPR-Cas
View homologs from eukaryotic dsDNA viruses

3D structure

AlphaFold 3 model.

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Feature viewer - predicted secondary structure

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Pfam annotations

Pfam Name Pfam Acc Pfam Length Colour HMM Start HMM End Ali Start Ali End Env Start Env End Evalue
Cas_Cas4 PF01930 160 5 159 111 284 107 285 3.6e-07

Sequence Viewer

Amino acid position: -

MRSKMIKKEEKDNKIYITVKDEETGIEWTAVVEKVEFEWCVKQKEELEVEDAEKSVMLDYALFGNCAIPKVTAEEYKNSLTKYTGEKMSRLLHILYNYEIVSQNDTKNIWVTELSRCLRRSYLMRKEGKTKVGLNEAMKMHIGSGLHMRLQSLLRKHGFETEVRVQRKTALGFQIVGRIDVYDKEENVIYELKYTHNDKLDSVRLNNYLRQLNYYIEMANAMKGYLVIVHADGSVEEIKRDWAETDLEKRANAFGIYVEENTLPPKKSRPDAECIECPFYNFCWGKL