Bacterial virus anti-defence systems · sequence & structure resource

Encyclopaedia of Bacterial Virus Anti-Defence Systems


Protein: Gad1

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Overview

Mode of Action (MoA) binds the GajAB complex, forming an octameric web around it that inhibits DNA recognition and cleavage.
Evidence B. subtilis cells expressing Gabija show phage resistance, but co-expression of Gad1 with Gabija allowed phage SPβ to replicate, showing loss of defence. Mutation of Gad1 abolished this immune evasion. Electrophoretic mobility shift assays (ECO_0000096) and DNA cleavage assays demonstrated that GajAB normally cleaves sequence-specific phage DNA, but when Gad1 is present, GajAB is no longer able to bind DNA or perform cleavage. Pull-down (ECO_0006249) assays and cryo-EM structural analysis (ECO_0006181) show that Gad1 binds directly to the bacterial Gabija GajAB complex.
MoA Category binds and inhibits host defence system
Subtype(s) of the defence system(s) inhibited by the protein Defence Subtype Bacillus cereus VD045 Gabija
Relevant publication(s) DOI 10.1038/s41586-023-06855-2
Other components of the anti-defence system Multicomponent System -
Known structure in PDB PDB ID 8U7I_E
Genome(s) encoding the protein Protein Source Bacillus phage phi3T
Defence system(s) inhibited by the protein Defences Gabija

3D structure

PDB entry model.

A similar PDB structure exists: 8U7I_E

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Feature viewer - predicted secondary structure

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Pfam annotations

No Pfam domains found

Sequence Viewer

Amino acid position: -

MKLIGIKTSNCFLVSDNIEGKRYFHSQLDELLFDGKRATETYKSDWFKLEKEPSVIEKQMPAKKINHRYELKEGFQESELTPKVIKASYIGEDSEYYEVKGLYDLKFEEIPQQNEKIEFEMNVIEEIDGELKLQSHNFNLNYNLLDRIQTHPMLLETKPCYLSQEESYKIIRNHIKANINPKFARITSDYDFCLTVVKVLELYKPHEYIVDLNAMYKRRKPKLEKRFQTKREVEIYKVAPKAYQSYPIVEPFSGKDVEDLKSNIKKFLDDLMAKINEPLVECKCCKGRGVILNEN