Bacterial virus anti-defence systems · sequence & structure resource

Encyclopaedia of Bacterial Virus Anti-Defence Systems


Protein: HgmTad2

Download all data for this protein (.zip)

Overview

Mode of Action (MoA) sequesters cyclic dinucleotides and gcADPR.
Evidence A synthetic E. coli strain was engineered with a genetic circuit where SpCas9 targeted a plasmid-borne chloramphenicol resistance gene. If an anti-CRISPR protein inhibits Cas9, the strain retains chloramphenicol resistance and survives antibiotic selection (ECO_0007003). In vitro cleavage assay evidence (a biochemical assay where purified Cas9 protein and guide RNA are incubated with target DNA and a candidate ACR protein outside of any living cell) further supported anti-CRISPR activity. However, direct binding is not supported by biolayer Interferometry evidence (ECO_0006350). Another study was not able to reproduce anti-CRISPR activity (10.1038/s41586-024-08122-4). Gel Shift Assay (ECO_0000096) was used to test binding to cyclic oligonucleotides, affinity was measured by Surface Plasmon Resonance (ECO_0001127), and there is X-ray crystallography evidence (ECO_0005670) to support the binding.
MoA Category degrades or sequesters molecules utilised by host defence systems
Subtype(s) of the defence system(s) inhibited by the protein Defence Subtype Pseudomonas aeruginosa strain PAO1 type I (ThsA with SIR2) Thoeris
Relevant publication(s) DOI 10.1016/j.chom.2019.01.003, 10.1038/s41586-024-08122-4
Other components of the anti-defence system Multicomponent System -
Known structure in PDB PDB ID 8KBI
Genome(s) encoding the protein Protein Source Metagenome
Defence system(s) inhibited by the protein Defences CBASS, Thoeris

3D structure

PDB entry model.

A similar PDB structure exists: 8KBI

Download structure file

Feature viewer - predicted secondary structure

Download features JSON file

Pfam annotations

Pfam Name Pfam Acc Pfam Length Colour HMM Start HMM End Ali Start Ali End Env Start Env End Evalue
Tad2-like PF11195 73 1 73 1 102 1 102 7.3e-28

Sequence Viewer

Amino acid position: -

MTFGQALESLKRGHLVARKGWNGKGMFIFMRPEDSLPTNMIVNQVKSLPESFKRWVANNHGDSETDRIKFTAYLCMKAADGTIVNGWLASQTDMLANDWVIVE