Bacterial virus anti-defence systems · sequence & structure resource

Encyclopaedia of Bacterial Virus Anti-Defence Systems


Protein: IPI*

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Overview

Mode of Action (MoA) binds and inhibits the GmrS/GmrD complex (glucose-modified hydroxymethylcytosine restriction endonuclease).
Evidence Ectopic expression (ECO_0000017) of IPI* in Escherichia coli rescues infection by T4 and other glucosyl-HMC-modified T-even phages from restriction by the GmrSD type IV endonuclease in plaque formation assays. Purified IPI* inhibits GmrSD nuclease activity in vitro (ECO_0000184). Site-directed mutagenesis of residue A40T abolishes IPI*-mediated inhibition of GmrSD (ECO_0001038).
MoA Category binds and inhibits host defence system
Subtype(s) of the defence system(s) inhibited by the protein Defence Subtype Escherichia coli type IV RM
Relevant publication(s) DOI 10.1016/j.jmb.2007.10.064
Other components of the anti-defence system Multicomponent System -
Known structure in PDB PDB ID 2JUB
Genome(s) encoding the protein Protein Source Enterobacteria phage T4
Defence system(s) inhibited by the protein Defences RM

3D structure

PDB entry model.

A similar PDB structure exists: 2JUB

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Feature viewer - predicted secondary structure

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Pfam annotations

Pfam Name Pfam Acc Pfam Length Colour HMM Start HMM End Ali Start Ali End Env Start Env End Evalue
IPI_T4 PF11634 76 1 76 20 95 20 95 7.9e-56

Sequence Viewer

Amino acid position: -

MKTFKEFTSTTTPVSTITEATLTSEVIKANKGREGKPMISLVDGEEIKGTVYLGDGWSAKKDGATIVISPAEETALFKAKHISAAHLKIIAKNLL