Bacterial virus anti-defence systems · sequence & structure resource

Encyclopaedia of Bacterial Virus Anti-Defence Systems


Protein: JSS1_004

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Overview

Mode of Action (MoA) phosphorylates Dnd, CRISPR-Cas, QatABCD, SIR2+HerA and DUF4297+HerA defence systems.
Evidence Deletion of JSS1_004 (JSS1Δ004) completely abolished JSS1’s ability to evade Dnd-mediated immunity (ECO_0001038), resulting in up to six orders of magnitude reduction in efficiency of plating (EOP) on Dnd+ strains. Quantitative phosphoproteomic analysis identified 480 phosphorylation sites across 333 proteins during JSS1 infection, including multiple sites on the DndFGH complex. Purified JSS1_0041–262 (containing only the kinase domain) was shown to phosphorylate DndFGH in vitro. Phosphomimetic mutations (e.g., T22E, T23E, Y1510E) in DndF and DndH mimicked phosphorylation and abolished the antiphage activity of the DndFGH complex. To test activity against other defence systems (QatABCD, SIR2+HerA, DUF4297+HerA), the authors performed phage plaque assays in bacterial strains expressing these systems. JSS1Δ004 showed reduced EOP on these strains, indicating active defence. In contrast, wild-type JSS1 overcame these defences, demonstrating that JSS1_004 enables immune evasion beyond Dnd.
MoA Category adds a post-translational modification and deactivates bacterial defence
Subtype(s) of the defence system(s) inhibited by the protein Defence Subtype Salmonella enterica type ABCDEFGH Dnd, the type I-E CRISPR-Cas system, QatABCD, SIR2+HerA and DUF4297+HerA.
Relevant publication(s) DOI 10.1038/s41564-024-01851-2
Other components of the anti-defence system Multicomponent System -
Known structure in PDB PDB ID -
Genome(s) encoding the protein Protein Source Salmonella phage JSS1
Defence system(s) inhibited by the protein Defences Dnd, CRISPR-Cas, QatABCD, SIR2+HerA, DUF4297+HerA
View homologs from eukaryotic dsDNA viruses

3D structure

AlphaFold 3 model.

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Feature viewer - predicted secondary structure

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Pfam annotations

No Pfam domains found

Sequence Viewer

Amino acid position: -

MNYTDIQARLAIIKSLPISELDKRQPLLVALAADIVNGETSDGNDTDGSNGLEYQDWWHTLGALMRDAGFRMLGNGHFSAAYSHELLPGRVIKVGFKKEDSGAAYTAFCRMHQGRAGIPNVYHVARHAGCYTVVLDRLQSCDRYANDVHAKYASAAQEFIECTGGDADWYAQYVSNEFIETCKMIREFFHGIASFDMHSGNIMFDDNDVPYITDPVSFSHDREREDGFPLDPEALLAEVEAVAQERMIERCRNRKAKCDPNGTFQVNRKAAMKRRKRNRKLRAKVAERDRLHFMAIRRERGVIERNERRAEMLMGSAWHDFWLRNGNATVRKIDQVNGLKWQLGDRLAIQAGLPLNIDKVLDAHLMG